If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 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'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 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'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 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'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 'cpa', 'Cpa.g.sc3766.1' => 'cpa', 'CsaV3_6G016780' => 'csa', 'CsaV3_UNG208960' => 'csa', 'CsaV3_UNG208970' => 'csa', 'CsaV3_UNG208980' => 'csa', 'CSS0004900' => 'camsi', 'CSS0007099' => 'camsi', 'CSS0008506' => 'camsi', 'CSS0008555' => 'camsi', 'CSS0011532' => 'camsi', 'CSS0014320' => 'camsi', 'CSS0015256' => 'camsi', 'CSS0018773' => 'camsi', 'CSS0022079' => 'camsi', 'CSS0022865' => 'camsi', 'CSS0024358' => 'camsi', 'CSS0024971' => 'camsi', 'CSS0034759' => 'camsi', 'CSS0038723' => 'camsi', 'CSS0047899' => 'camsi', 'CSS0050494' => 'camsi', 'DCAR_001523' => 'dca', 'DCAR_010481' => 'dca', 'DCAR_010482' => 'dca', 'DCAR_032530' => 'dca', 'DCAR_032531' => 'dca', 'DCAR_032545' => 'dca', 'DCAR_032546' => 'dca', 'ECA074G0002' => 'eca', 'ECA074G0004' => 'eca', 'ECA169G0005' => 'eca', 'EL10Ac2g02910' => 'bvu', 'EL10Ac3g06485' => 'bvu', 'EL10Ac3g07025' => 'bvu', 'EL10Ac4g08618' => 'bvu', 'EL10Ac4g08619' => 'bvu', 'EL10Ac5g11085' => 'bvu', 'EL10Ac5g11386' => 'bvu', 'EL10Ac5g11886' => 'bvu', 'EL10Ac7g16517' => 'bvu', 'EL10Ac8g19098' => 'bvu', 'EL10Ac8g19099' => 'bvu', 'EL10As12g24040' => 'bvu', 'EL10As12g24041' => 'bvu', 'EL10As15g24105' => 'bvu', 'EL10As15g24106' => 'bvu', 'EL10As15g24113' => 'bvu', 'EL10As15g24114' => 'bvu', 'EL10As15g24115' => 'bvu', 'EL10As26g24241' => 'bvu', 'Eucgr.D00860' => 'egr', 'Eucgr.H01180' => 'egr', 'Eucgr.I00426' => 'egr', 'Eucgr.I01854' => 'egr', 'Eucgr.J02732' => 'egr', 'Eucgr.K01908' => 'egr', 'FAN24G0066' => 'fan', 'FAN24G0723' => 'fan', 'FAN24G1010' => 'fan', 'FvH4_c3g00120' => 'fve', 'Glyma.01G201500' => 'gma', 'Glyma.05G094500' => 'gma', 'Glyma.11G146100' => 'gma', 'Glyma.13G245200' => 'gma', 'Gohir.A02G077402' => 'ghi', 'Gohir.A03G043250' => 'ghi', 'Gohir.A04G039400' => 'ghi', 'Gohir.A04G039450' => 'ghi', 'Gohir.A04G058421' => 'ghi', 'Gohir.A05G089950' => 'ghi', 'Gohir.A05G142150' => 'ghi', 'Gohir.A05G306433' => 'ghi', 'Gohir.A05G307266' => 'ghi', 'Gohir.A05G323788' => 'ghi', 'Gohir.A05G323796' => 'ghi', 'Gohir.A06G098106' => 'ghi', 'Gohir.A08G015300' => 'ghi', 'Gohir.A08G078001' => 'ghi', 'Gohir.A08G249972' => 'ghi', 'Gohir.A09G045500' => 'ghi', 'Gohir.A09G045700' => 'ghi', 'Gohir.A09G046338' => 'ghi', 'Gohir.A09G093100' => 'ghi', 'Gohir.A09G101260' => 'ghi', 'Gohir.A10G100333' => 'ghi', 'Gohir.A11G180164' => 'ghi', 'Gohir.A11G180330' => 'ghi', 'Gohir.A11G180496' => 'ghi', 'Gohir.A12G124800' => 'ghi', 'Gohir.D01G101826' => 'ghi', 'Gohir.D01G101839' => 'ghi', 'Gohir.D01G134200' => 'ghi', 'Gohir.D02G117466' => 'ghi', 'Gohir.D02G117488' => 'ghi', 'Gohir.D02G133700' => 'ghi', 'Gohir.D02G143001' => 'ghi', 'Gohir.D02G152108' => 'ghi', 'Gohir.D02G152152' => 'ghi', 'Gohir.D03G092550' => 'ghi', 'Gohir.D04G096596' => 'ghi', 'Gohir.D06G107201' => 'ghi', 'Gohir.D06G185433' => 'ghi', 'Gohir.D07G098650' => 'ghi', 'Gohir.D07G150466' => 'ghi', 'Gohir.D08G147600' => 'ghi', 'Gohir.D08G218225' => 'ghi', 'Gohir.D11G234166' => 'ghi', 'Gohir.D11G278650' => 'ghi', 'Gohir.D13G096725' => 'ghi', 'Gorai.001G106100' => 'gra', 'Gorai.001G269800' => 'gra', 'Gorai.002G022200' => 'gra', 'Gorai.003G065500' => 'gra', 'Gorai.003G096400' => 'gra', 'Gorai.003G150500' => 'gra', 'Gorai.004G116400' => 'gra', 'Gorai.005G160600' => 'gra', 'Gorai.007G300800' => 'gra', 'Gorai.009G394900' => 'gra', 'Gorai.010G067500' => 'gra', 'Gorai.010G216900' => 'gra', 'Gorai.011G192400' => 'gra', 'Gorai.013G212500' => 'gra', 'HanXRQChr00c0214g0572641' => 'han', 'HanXRQChr00c0214g0572651' => 'han', 'HanXRQChr00c0264g0572831' => 'han', 'HanXRQChr00c0264g0572881' => 'han', 'HanXRQChr00c0264g0572891' => 'han', 'HanXRQChr00c0289g0573051' => 'han', 'HanXRQChr00c0349g0574001' => 'han', 'HanXRQChr00c0349g0574011' => 'han', 'HanXRQChr00c0379g0574301' => 'han', 'HanXRQChr00c0386g0574421' => 'han', 'HanXRQChr00c0386g0574431' => 'han', 'HanXRQChr00c0434g0574661' => 'han', 'HanXRQChr00c0451g0574811' => 'han', 'HanXRQChr00c0454g0574891' => 'han', 'HanXRQChr00c0454g0574901' => 'han', 'HanXRQChr00c0496g0575221' => 'han', 'HanXRQChr00c0533g0575531' => 'han', 'HanXRQChr00c0554g0575661' => 'han', 'HanXRQChr00c0561g0575911' => 'han', 'HanXRQChr00c0572g0575991' => 'han', 'HanXRQChr00c0572g0576001' => 'han', 'HanXRQChr00c0585g0576201' => 'han', 'HanXRQChr00c0625g0576561' => 'han', 'HanXRQChr00c0634g0576571' => 'han', 'HanXRQChr00c0634g0576581' => 'han', 'HanXRQChr00c0747g0577141' => 'han', 'HanXRQChr00c0747g0577151' => 'han', 'HanXRQChr00c0780g0577311' => 'han', 'HanXRQChr00c0788g0577381' => 'han', 'HanXRQChr01g0008351' => 'han', 'HanXRQChr01g0020141' => 'han', 'HanXRQChr01g0020151' => 'han', 'HanXRQChr02g0059631' => 'han', 'HanXRQChr02g0059641' => 'han', 'HanXRQChr02g0059781' => 'han', 'HanXRQChr03g0062801' => 'han', 'HanXRQChr03g0064311' => 'han', 'HanXRQChr04g0123001' => 'han', 'HanXRQChr04g0127401' => 'han', 'HanXRQChr04g0127411' => 'han', 'HanXRQChr05g0150471' => 'han', 'HanXRQChr05g0152351' => 'han', 'HanXRQChr05g0152361' => 'han', 'HanXRQChr05g0152481' => 'han', 'HanXRQChr05g0152491' => 'han', 'HanXRQChr07g0194891' => 'han', 'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ), 'gf_id' => 'HOM05D000729', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000729' ), 'data_identifier' => 'HOM05D000729', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000729', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p08710' => 'bna', 'Aa31LG8G11340' => 'aar', 'Aa31LG8G11350' => 'aar', 'Ah.08g221550' => 'amhyb', 'Ah.08g221560' => 'amhyb', 'Ah.08g222950' => 'amhyb', 'Ah.08g222960' => 'amhyb', 'Ah.09g227340' => 'amhyb', 'Ah.09g227350' => 'amhyb', 'Ah.10g027240' => 'amhyb', 'Ah.10g027250' => 'amhyb', 'Ah.10g027270' => 'amhyb', 'Ah.10g027280' => 'amhyb', 'Ah.10g027400' => 'amhyb', 'Ah.10g027410' => 'amhyb', 'Ah.10g027680' => 'amhyb', 'Ah.10g027690' => 'amhyb', 'Ah.10g027710' => 'amhyb', 'Ah.10g027720' => 'amhyb', 'Ah.10g029030' => 'amhyb', 'Ah.10g029040' => 'amhyb', 'AL1G51250' => 'aly', 'AL1G51260' => 'aly', 'AL2G21870' => 'aly', 'AL2G21880' => 'aly', 'AL7G44080' => 'aly', 'AL7G44090' => 'aly', 'AL9U12010' => 'aly', 'AL9U12020' => 'aly', 'Aqoxy4G02024' => 'aox', 'Aqoxy4G02025' => 'aox', 'Aqoxy7G01466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.084TER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0BYT70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZWV8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TE0T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55GAEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q4XIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8IFR8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K22SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K87SY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.984MHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LD85R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9SR1J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A85ADF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ASG6ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0WG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B7NU84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D45B89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLC8Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8A372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU0XIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8GDNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJG1UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXN31S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH8UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVWB4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KE24QQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5SUCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M13VEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUY2HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG6FS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGJ0AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIYG2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY619X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3G9EK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZI0U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4S00L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWFL12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6TNUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7RS39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX11DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7XTN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X93MIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJN4MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8FS1H' => 'arhy', 'ATCG00890' => 'ath', 'ATCG00900' => 'ath', 'ATCG01240' => 'ath', 'ATCG01250' => 'ath', 'ATR0258G001' => 'atr', 'ATR0329G014' => 'atr', 'ATR1169G001' => 'atr', 'Atru.chr12.138' => 'acertr', 'Atru.chr2.344' => 'acertr', 'Atru.chr2.735' => 'acertr', 'Atru.chr2.739' => 'acertr', 'Atru.chr3.4250' => 'acertr', 'AUR62013914' => 'cqu', 'AUR62025890' => 'cqu', 'AUR62030849' => 'cqu', 'AUR62032990' => 'cqu', 'AUR62041553' => 'cqu', 'AUR62043795' => 'cqu', 'BcaB02g11352' => 'bca', 'BcaB03g16403' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_147p00020' => 'bna', 'BolC2t10586H' => 'bol', 'BolC2t10587H' => 'bol', 'BolC2t10607H' => 'bol', 'BolC6t36195H' => 'bol', 'BolC7t41701H' => 'bol', 'BolC7t41702H' => 'bol', 'BolSC29t60494H' => 'bol', 'BolSC29t60495H' => 'bol', 'BolSC29t60516H' => 'bol', 'BolSC29t60517H' => 'bol', 'BolSC29t60537H' => 'bol', 'BolSC29t60559H' => 'bol', 'BolSC29t60560H' => 'bol', 'BolSC29t60619H' => 'bol', 'BolSC29t60627H' => 'bol', 'BolSC35t60680H' => 'bol', 'BolSC35t60717H' => 'bol', 'BolSC35t60718H' => 'bol', 'BolSC37t60784H' => 'bol', 'BolSC37t60785H' => 'bol', 'BolSC44t60834H' => 'bol', 'BolSC44t60835H' => 'bol', 'BolSC45t60895H' => 'bol', 'BolSC45t60896H' => 'bol', 'BolSC45t60897H' => 'bol', 'BolSC45t60922H' => 'bol', 'BolSC46t60953H' => 'bol', 'BolSC46t60970H' => 'bol', 'BolSC46t60971H' => 'bol', 'BolSC47t61055H' => 'bol', 'BolSC47t61056H' => 'bol', 'BolSC47t61070H' => 'bol', 'BolSC49t61130H' => 'bol', 'BolSC49t61155H' => 'bol', 'BolSC49t61156H' => 'bol', 'BolSC49t61215H' => 'bol', 'BolSC49t61216H' => 'bol', 'BolSC56t61238H' => 'bol', 'BraA07t28396Z' => 'bra', 'BraSC103t45436Z' => 'bra', 'BraSC103t45493Z' => 'bra', 'BraSC103t45494Z' => 'bra', 'BraSC138t45522Z' => 'bra', 'BraSC138t45542Z' => 'bra', 'BraSC138t45543Z' => 'bra', 'BraSC143t45646Z' => 'bra', 'BraSC143t45647Z' => 'bra', 'BraSC143t45668Z' => 'bra', 'BraSC143t45669Z' => 'bra', 'BraSC179t45784Z' => 'bra', 'BraSC179t45785Z' => 'bra', 'BraSC25t45897Z' => 'bra', 'BraSC25t45898Z' => 'bra', 'BraSC58t46449Z' => 'bra', 'BraSC58t46450Z' => 'bra', 'BraSC58t46468Z' => 'bra', 'BraSC58t46469Z' => 'bra', 'BraSC59t46513Z' => 'bra', 'BraSC59t46525Z' => 'bra', 'BraSC59t46538Z' => 'bra', 'BraSC59t46539Z' => 'bra', 'BraSC59t46560Z' => 'bra', 'BraSC59t46561Z' => 'bra', 'C02p28740' => 'bna', 'C04p22490' => 'bna', 'C06p21330' => 'bna', 'C06p23130' => 'bna', 'C06p23140' => 'bna', 'C09p24720' => 'bna', 'C09p24730' => 'bna', 'CAN.G1021.15' => 'can', 'CAN.G1045.7' => 'can', 'CAN.G1148.5' => 'can', 'CAN.G1167.12' => 'can', 'CAN.G1178.1' => 'can', 'CAN.G1185.9' => 'can', 'CAN.G1191.10' => 'can', 'CAN.G1298.16' => 'can', 'CAN.G134.5' => 'can', 'CAN.G1738.18' => 'can', 'CAN.G1875.3' => 'can', 'CAN.G21.56' => 'can', 'CAN.G21.57' => 'can', 'CAN.G255.19' => 'can', 'CAN.G262.3' => 'can', 'CAN.G267.19' => 'can', 'CAN.G30.9' => 'can', 'CAN.G343.3' => 'can', 'CAN.G343.4' => 'can', 'CAN.G398.11' => 'can', 'CAN.G547.17' => 'can', 'CAN.G612.3' => 'can', 'CAN.G886.8' => 'can', 'CARHR282330' => 'chi', 'CARHR282340' => 'chi', 'CARHR282520' => 'chi', 'CARHR282530' => 'chi', 'Ca_09321_v3' => 'car', 'Cc00_g23030' => 'ccan', 'CDE02G2847' => 'cde', 'Cfa021581' => 'cfa', 'Cfa021582' => 'cfa', 'Ciclev10029717m.g' => 'ccl', 'CiPaw.03G002000' => 'cil', 'COL.COLO4_01250' => 'col', 'Cpa.g.sc2.66' => 'cpa', 'Cpa.g.sc2.67' => 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'HanXRQChr07g0194901' => 'han', 'HanXRQChr08g0221201' => 'han', 'HanXRQChr08g0227771' => 'han', 'HanXRQChr08g0230001' => 'han', 'HanXRQChr09g0249681' => 'han', 'HanXRQChr09g0260851' => 'han', 'HanXRQChr09g0260861' => 'han', 'HanXRQChr10g0284481' => 'han', 'HanXRQChr10g0317941' => 'han', 'HanXRQChr10g0317951' => 'han', 'HanXRQChr11g0321181' => 'han', 'HanXRQChr11g0321191' => 'han', 'HanXRQChr11g0327111' => 'han', 'HanXRQChr11g0327121' => 'han', 'HanXRQChr11g0333781' => 'han', 'HanXRQChr11g0333791' => 'han', 'HanXRQChr12g0369921' => 'han', 'HanXRQChr12g0369931' => 'han', 'HanXRQChr12g0373881' => 'han', 'HanXRQChr13g0386751' => 'han', 'HanXRQChr13g0399651' => 'han', 'HanXRQChr13g0403051' => 'han', 'HanXRQChr13g0413651' => 'han', 'HanXRQChr13g0413661' => 'han', 'HanXRQChr13g0413721' => 'han', 'HanXRQChr13g0413731' => 'han', 'HanXRQChr13g0413801' => 'han', 'HanXRQChr13g0413811' => 'han', 'HanXRQChr13g0413871' => 'han', 'HanXRQChr13g0413881' => 'han', 'HanXRQChr13g0416571' => 'han', 'HanXRQChr13g0416581' => 'han', 'HanXRQChr13g0418941' => 'han', 'HanXRQChr15g0465541' => 'han', 'HanXRQChr15g0484761' => 'han', 'HanXRQChr15g0489691' => 'han', 'HanXRQChr15g0489701' => 'han', 'HanXRQChr16g0530781' => 'han', 'HanXRQChr16g0530791' => 'han', 'HanXRQChr17g0567651' => 'han', 'HanXRQChr17g0569661' => 'han', 'HanXRQChr17g0569671' => 'han', 'HanXRQCPg0580271' => 'han', 'HanXRQCPg0580281' => 'han', 'HanXRQCPg0580441' => 'han', 'HanXRQCPg0580451' => 'han', 'Haze_26858' => 'cav', 'Hma1.2p1_0052F.1_g030753' => 'hma', 'Hma1.2p1_0052F.1_g030756' => 'hma', 'Hma1.2p1_0357F.1_g134440' => 'hma', 'Hma1.2p1_0535F.1_g173850' => 'hma', 'Hma1.2p1_1244F.1_g270050' => 'hma', 'Hma1.2p1_1244F.1_g270060' => 'hma', 'Hma1.2p1_1244F.1_g270070' => 'hma', 'Hma1.2p1_1266F.1_g271445' => 'hma', 'Hund01553' => 'sun', 'Hund01554' => 'sun', 'Hund03961' => 'sun', 'Hund03962' => 'sun', 'Hund03963' => 'sun', 'Hund03964' => 'sun', 'Hund03965' => 'sun', 'Hund07988' => 'sun', 'Hund08789' => 'sun', 'Hund08790' => 'sun', 'Hund10279' => 'sun', 'Hund15217' => 'sun', 'Hund15219' => 'sun', 'Hund22780' => 'sun', 'Hund23964' => 'sun', 'Hund23965' => 'sun', 'Hund27635' => 'sun', 'Hund27858' => 'sun', 'Hund27885' => 'sun', 'Hund27921' => 'sun', 'Hund27951' => 'sun', 'Hund28172' => 'sun', 'Hund28540' => 'sun', 'Hund28970' => 'sun', 'Hund29048' => 'sun', 'Hund29105' => 'sun', 'Hund29118' => 'sun', 'Hund29149' => 'sun', 'Hund29155' => 'sun', 'Hund31224' => 'sun', 'Lalb_Chr00c24g0406781' => 'lal', 'Lalb_Chr03g0039261' => 'lal', 'Lalb_Chr04g0260201' => 'lal', 'Lalb_Chr05g0227471' => 'lal', 'Lalb_Chr07g0191581' => 'lal', 'Lalb_Chr07g0191591' => 'lal', 'Lalb_Chr07g0191601' => 'lal', 'Lalb_Chr07g0191631' => 'lal', 'Lalb_Chr07g0191641' => 'lal', 'Lalb_Chr07g0191891' => 'lal', 'Lalb_Chr07g0191911' => 'lal', 'Lalb_Chr09g0330561' => 'lal', 'Lalb_Chr12g0202141' => 'lal', 'Lalb_Chr12g0206641' => 'lal', 'Lalb_Chr12g0206651' => 'lal', 'Lalb_Chr19g0126111' => 'lal', 'Lalb_Chr22g0356911' => 'lal', 'Lalb_Chr24g0400841' => 'lal', 'Lalb_Chr25g0281791' => 'lal', 'Lalb_Chr25g0281801' => 'lal', 'Lalb_Chr25g0281811' => 'lal', 'Lalb_Chr25g0281821' => 'lal', 'Lalb_Chr25g0281831' => 'lal', 'Lalb_Chr25g0281841' => 'lal', 'Lalb_Chr25g0281891' => 'lal', 'Lalb_Chr25g0281901' => 'lal', 'Lj1g0004410' => 'lja', 'Lj1g0023002' => 'lja', 'Lj2P1238T95' => 'lonja', 'Lj2P1239T117' => 'lonja', 'Lj4g0028091' => 'lja', 'LjContig00318g0011220' => 'lja', 'LjContig00319g0001918' => 'lja', 'LjContig00489g0003974' => 'lja', 'LjContig00489g0020564' => 'lja', 'Lsat_1_v5_gn_0_40440' => 'lsa', 'Lsat_1_v5_gn_1_95081' => 'lsa', 'Lsat_1_v5_gn_3_112740' => 'lsa', 'Lsat_1_v5_gn_3_14201' => 'lsa', 'Lsat_1_v5_gn_3_14241' => 'lsa', 'Lsat_1_v5_gn_3_92301' => 'lsa', 'Lsat_1_v5_gn_4_11820' => 'lsa', 'Lsat_1_v5_gn_5_163541' => 'lsa', 'Lsat_1_v5_gn_6_37880' => 'lsa', 'Lsat_1_v5_gn_6_40860' => 'lsa', 'Lsat_1_v5_gn_6_40880' => 'lsa', 'Lsat_1_v5_gn_7_301' => 'lsa', 'Lsat_1_v5_gn_8_77220' => 'lsa', 'Lsat_1_v5_gn_8_77240' => 'lsa', 'Lsat_1_v5_gn_9_18660' => 'lsa', 'Lsat_1_v5_gn_9_5741' => 'lsa', 'Manes.17G022247' => 'mes', 'MBI05_g23317_MAGBIO' => 'mbi', 'MBI17_g45616_MAGBIO' => 'mbi', 'MD01G1004500' => 'mdo', 'MD01G1004600' => 'mdo', 'MD01G1004700' => 'mdo', 'MD06G1091100' => 'mdo', 'Medtr0002s0300' => 'mtr', 'Medtr0002s0310' => 'mtr', 'Medtr1g019230' => 'mtr', 'Medtr1g088510' => 'mtr', 'Medtr3g035660' => 'mtr', 'Medtr3g091540' => 'mtr', 'Medtr4g103280' => 'mtr', 'Medtr7g115110' => 'mtr', 'MELO3C000729.2' => 'cme', 'MELO3C003985.2' => 'cme', 'MELO3C027805.2' => 'cme', 'MELO3C031265.2' => 'cme', 'MELO3C031267.2' => 'cme', 'MELO3C035265.2' => 'cme', 'Migut.D01322' => 'egut', 'Migut.D01376' => 'egut', 'Migut.D01377' => 'egut', 'Migut.D01404' => 'egut', 'Migut.D01499' => 'egut', 'Migut.E00944' => 'egut', 'Migut.F01145' => 'egut', 'Migut.F01470' => 'egut', 'Migut.F01471' => 'egut', 'Migut.L01139' => 'egut', 'MSTRG.26838' => 'ama', 'Nitab4.5_0000111g0030' => 'nta', 'Nitab4.5_0000149g0250' => 'nta', 'Nitab4.5_0000153g0170' => 'nta', 'Nitab4.5_0000158g0140' => 'nta', 'Nitab4.5_0000174g0030' => 'nta', 'Nitab4.5_0000241g0080' => 'nta', 'Nitab4.5_0000684g0100' => 'nta', 'Nitab4.5_0000684g0120' => 'nta', 'Nitab4.5_0000705g0090' => 'nta', 'Nitab4.5_0000729g0050' => 'nta', 'Nitab4.5_0000729g0070' => 'nta', 'Nitab4.5_0000729g0080' => 'nta', 'Nitab4.5_0000729g0100' => 'nta', 'Nitab4.5_0000729g0110' => 'nta', 'Nitab4.5_0001392g0020' => 'nta', 'Nitab4.5_0001478g0220' => 'nta', 'Nitab4.5_0001761g0010' => 'nta', 'Nitab4.5_0002229g0140' => 'nta', 'Nitab4.5_0002489g0060' => 'nta', 'Nitab4.5_0003644g0110' => 'nta', 'Nitab4.5_0003706g0020' => 'nta', 'Nitab4.5_0003957g0020' => 'nta', 'Nitab4.5_0004394g0040' => 'nta', 'Nitab4.5_0004471g0070' => 'nta', 'Nitab4.5_0004533g0050' => 'nta', 'Nitab4.5_0004533g0060' => 'nta', 'Nitab4.5_0004533g0080' => 'nta', 'Nitab4.5_0004920g0010' => 'nta', 'Nitab4.5_0004929g0010' => 'nta', 'Nitab4.5_0004929g0040' => 'nta', 'Nitab4.5_0005246g0030' => 'nta', 'Nitab4.5_0006114g0050' => 'nta', 'Nitab4.5_0006542g0040' => 'nta', 'Nitab4.5_0007104g0020' => 'nta', 'Nitab4.5_0007104g0050' => 'nta', 'Nitab4.5_0007104g0090' => 'nta', 'Nitab4.5_0007738g0070' => 'nta', 'Nitab4.5_0007979g0020' => 'nta', 'Nitab4.5_0007979g0040' => 'nta', 'Nitab4.5_0007979g0050' => 'nta', 'Nitab4.5_0008348g0040' => 'nta', 'Nitab4.5_0009566g0030' => 'nta', 'Nitab4.5_0012234g0040' => 'nta', 'Nitab4.5_0012260g0060' => 'nta', 'Nitab4.5_0012260g0090' => 'nta', 'Nitab4.5_0012558g0020' => 'nta', 'Nitab4.5_0012558g0030' => 'nta', 'Nitab4.5_0014666g0030' => 'nta', 'Nitab4.5_0018575g0010' => 'nta', 'Nitab4.5_0018575g0020' => 'nta', 'Nitab4.5_0027450g0010' => 'nta', 'Nn029s41588' => 'nnu', 'Nn029s41589' => 'nnu', 'Nn031s41602' => 'nnu', 'Nn031s41603' => 'nnu', 'Nn064s42225' => 'nnu', 'Nn064s42226' => 'nnu', 'Nn1g04098' => 'nnu', 'Nn206s45069' => 'nnu', 'Nn206s45070' => 'nnu', 'Nn219s45284' => 'nnu', 'Nn219s45285' => 'nnu', 'Nn233s45561' => 'nnu', 'Nn233s45562' => 'nnu', 'Nn241s45687' => 'nnu', 'Nn241s45688' => 'nnu', 'Nn269s46005' => 'nnu', 'Nn269s46006' => 'nnu', 'Oeu010686.1' => 'oeu', 'Oeu012824.1' => 'oeu', 'Oeu012825.1' => 'oeu', 'Oeu015122.1' => 'oeu', 'Oeu015132.1' => 'oeu', 'Oeu028762.1' => 'oeu', 'Oeu038564.1' => 'oeu', 'Oeu041413.1' => 'oeu', 'Oeu042473.1' => 'oeu', 'Oeu054715.1' => 'oeu', 'Oeu062839.1' => 'oeu', 'Os01g0856850' => 'osa', 'Os04g0309100' => 'osa', 'Os04g0473025' => 'osa', 'Os09g0110750' => 'osa', 'Peaxi162Scf00005g04915' => 'pax', 'Peaxi162Scf00014g00287' => 'pax', 'Peaxi162Scf00080g00517' => 'pax', 'Peaxi162Scf00085g02315' => 'pax', 'Peaxi162Scf00299g00113' => 'pax', 'Peaxi162Scf00987g00214' => 'pax', 'PGR111G0089' => 'pgr', 'PGR111G0104' => 'pgr', 'PGR111G0112' => 'pgr', 'PGR111G0125' => 'pgr', 'PGSC0003DMG400008969' => 'stu', 'PGSC0003DMG400011820' => 'stu', 'PGSC0003DMG400015298' => 'stu', 'PGSC0003DMG400020529' => 'stu', 'PGSC0003DMG400023105' => 'stu', 'PGSC0003DMG400038200' => 'stu', 'Phvul.001G126100' => 'pvu', 'Phvul.001G209700' => 'pvu', 'Phvul.002G064700' => 'pvu', 'Phvul.002G090555' => 'pvu', 'Phvul.002G090566' => 'pvu', 'Phvul.003G089801' => 'pvu', 'Phvul.003G089802' => 'pvu', 'Phvul.003G089803' => 'pvu', 'Phvul.004G025200' => 'pvu', 'Phvul.004G079700' => 'pvu', 'Phvul.004G098800' => 'pvu', 'Phvul.006G026640' => 'pvu', 'Phvul.009G090260' => 'pvu', 'Phvul.009G090272' => 'pvu', 'Phvul.009G090284' => 'pvu', 'Phvul.011G081400' => 'pvu', 'Potri.004G140500' => 'ptr', 'Potri.008G207100' => 'ptr', 'Potri.011G075051' => 'ptr', 'Potri.011G075200' => 'ptr', 'Potri.011G084201' => 'ptr', 'Potri.011G084251' => 'ptr', 'Potri.013G138900' => 'ptr', 'Potri.013G139112' => 'ptr', 'PRCOL_00004005' => 'pco', 'Prupe.4G252200' => 'ppe', 'Psat0s1160g0200' => 'psa', 'Psat0s2011g0040' => 'psa', 'Psat1g041440' => 'psa', 'Psat1g055680' => 'psa', 'Psat5g119080' => 'psa', 'Psat5g286080' => 'psa', 'Psat5g286120' => 'psa', 'Psat5g304360' => 'psa', 'Psat6g178720' => 'psa', 'PSO339G5440' => 'pso', 'PSO357G0279' => 'pso', 'PSO357G0336' => 'pso', 'PSO548G0047' => 'pso', 'PSO548G0056' => 'pso', 'PSO548G0058' => 'pso', 'PSO548G0065' => 'pso', 'QL93p0823_0001' => 'qlo', 'QL93p0823_0003' => 'qlo', 'RcHm_v2.0_Chr2g0118391' => 'rch', 'RcHm_v2.0_Chr2g0118411' => 'rch', 'RcHm_v2.0_Chr4g0390051' => 'rch', 'RcHm_v2.0_Chr5g0051091' => 'rch', 'RcHm_v2.0_Chr5g0051111' => 'rch', 'RcHm_v2.0_Chr7g0221081' => 'rch', 'RcHm_v2.0_CPg0501741' => 'rch', 'RcHm_v2.0_CPg0501751' => 'rch', 'RcHm_v2.0_CPg0501771' => 'rch', 'RcHm_v2.0_CPg0502641' => 'rch', 'RcHm_v2.0_CPg0502661' => 'rch', 'RcHm_v2.0_CPg0502671' => 'rch', 'Sabra02G0072900' => 'sbr', 'Sabra04G0092400' => 'sbr', 'Sabra06G0064300' => 'sbr', 'SabraPtG0004800' => 'sbr', 'SalBow1G2460' => 'sbo', 'SalBow1G3941' => 'sbo', 'SalBow1G4562' => 'sbo', 'SalBow1G5916' => 'sbo', 'SalBow1G6647' => 'sbo', 'SalBow1G7983' => 'sbo', 'SalBow5G1465' => 'sbo', 'SalBow5G2103' => 'sbo', 'SalBow6G4458' => 'sbo', 'SalBow6G4786' => 'sbo', 'SalBow6G5072' => 'sbo', 'Sc03g0010030' => 'sci', 'Sc03g0010040' => 'sci', 'Sc05g0004070' => 'sci', 'Sc05g0004080' => 'sci', 'Sc25g0001940' => 'sci', 'Sc25g0001950' => 'sci', 'Sc25g0001990' => 'sci', 'ScUNg0000280' => 'sci', 'ScUNg0001200' => 'sci', 'Sed0001647' => 'sed', 'Sed0005474' => 'sed', 'Sed0005985' => 'sed', 'Sed0007281' => 'sed', 'Sed0008128' => 'sed', 'Sed0012918' => 'sed', 'Sed0014732' => 'sed', 'Sed0019191' => 'sed', 'Sed0020144' => 'sed', 'Sed0027321' => 'sed', 'SEGI_05788' => 'sgi', 'SEGI_37255' => 'sgi', 'SGA_v2.0_scaffold137G35141' => 'sas', 'SGA_v2.0_scaffold78G25449' => 'sas', 'SGA_v2.0_scaffold95G28824' => 'sas', 'SMO086G0026' => 'smo', 'SMO086G0067' => 'smo', 'Solyc00g500146.1' => 'sly', 'Solyc00g500299.1' => 'sly', 'Solyc01g017160.2' => 'sly', 'Solyc01g017170.1' => 'sly', 'Solyc01g017180.3' => 'sly', 'Solyc01g017260.1' => 'sly', 'Solyc02g011890.1' => 'sly', 'Solyc02g011900.1' => 'sly', 'Solyc02g011910.1' => 'sly', 'Solyc03g122010.1' => 'sly', 'Solyc04g039790.3' => 'sly', 'Solyc04g039800.3' => 'sly', 'Solyc05g024440.1' => 'sly', 'Solyc06g009580.1' => 'sly', 'Solyc08g061900.1' => 'sly', 'Solyc09g015260.1' => 'sly', 'Solyc09g050069.1' => 'sly', 'Solyc09g050070.1' => 'sly', 'Solyc09g055840.1' => 'sly', 'Solyc09g061460.3' => 'sly', 'Solyc10g061887.1' => 'sly', 'Solyc11g021090.3' => 'sly', 'Solyc11g021100.2' => 'sly', 'Solyc11g021110.3' => 'sly', 'Solyc11g021120.1' => 'sly', 'Solyc12g027820.1' => 'sly', 'Solyc12g033020.1' => 'sly', 'Solyc12g033080.1' => 'sly', 'Sopen02g009110' => 'spe', 'Sopen04g001920' => 'spe', 'TAR365G1092' => 'tar', 'TAR365G1106' => 'tar', 'TAR633G0118' => 'tar', 'TAR636G2773' => 'tar', 'Thhalv10011731m.g' => 'esa', 'Thhalv10011843m.g' => 'esa', 'Thhalv10027086m.g' => 'esa', 'TPR.G15893' => 'tpr', 'TPR.G35372' => 'tpr', 'TPR.G39041' => 'tpr', 'TPR.G6953' => 'tpr', 'TWI12G0616' => 'twi', 'unitig_22.g5070' => 'ugi', 'unitig_87.g27921' => 'ugi', 'unitig_91.g26488' => 'ugi', 'unitig_91.g26517' => 'ugi', 'unitig_91.g26529' => 'ugi', 'vmacro22398' => 'vma', 'vmacro22423' => 'vma', 'VMungo0009G0001' => 'vmu', 'VMungo0464G0132' => 'vmu', 'VMungo0464G1559' => 'vmu', 'VMungo0580G0003' => 'vmu', 'VMungo0643G0001' => 'vmu', 'VMungo0942G0002' => 'vmu', 'Zm00001eb009520' => 'zma', 'Zm00001eb412340' => 'zma', 'Zm00001eb435130' => 'zma', 'Zm00001eb437080' => 'zma', 'Zm00001eb437740' => 'zma', 'Zm00001eb442130' => 'zma' ) $gf_id = 'HOM05D000729' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000729' ) $data_identifier = 'HOM05D000729' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 2, 'amhyb' => (int) 18, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 44, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 2, 'bol' => (int) 38, 'bra' => (int) 25, 'can' => (int) 23, 'chi' => (int) 4, 'car' => (int) 1, 'ccan' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 1, 'cil' => (int) 1, 'col' => (int) 1, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 19, 'egr' => (int) 6, 'fan' => (int) 3, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 45, 'gra' => (int) 14, 'han' => (int) 92, 'cav' => (int) 1, 'hma' => (int) 8, 'sun' => (int) 30, 'lal' => (int) 26, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 16, 'mes' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 1, 'nta' => (int) 51, 'nnu' => (int) 17, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 16, 'ptr' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 1, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 2, 'rch' => (int) 12, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 9, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 28, 'spe' => (int) 2, 'tar' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 1, 'ugi' => (int) 5, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 0